Index A | B | C | D | E | F | G | H | I | J | L | M | N | P | R | S | T | U | V | Z A append() (colomoto.minibn.MultiValuedNetwork method) as_dataframe() (colomoto.types.Hypercube method) (colomoto.types.HypercubeCollection method) (colomoto.types.PartialState method) as_dnf() (colomoto.minibn.BooleanNetwork method) auto_cast() (colomoto.minibn.BaseNetwork class method) B BaseNetwork (class in colomoto.minibn) biolqm_format (colomoto.minibn.BaseNetwork attribute) (colomoto.minibn.BooleanNetwork attribute) (colomoto.minibn.MultiValuedNetwork attribute) BlockParallelDynamics (class in colomoto.minibn) BlockSequentialDynamics (class in colomoto.minibn) BooleanNetwork (class in colomoto.minibn) C cast() (colomoto.types.HypercubeCollection class method) cellcollective module CellCollectiveConnector (class in cellcollective) CellCollectiveSBMLModel (class in cellcollective) colomoto.minibn module colomoto.types module colomoto_jupyter module connect() (in module cellcollective) constants() (colomoto.minibn.BooleanNetwork method) copy() (colomoto.minibn.BaseNetwork method) count() (colomoto.types.Hypercube method) (colomoto.types.HypercubeCollection method) (colomoto.types.State method) D disp_jupyter_js() (in module colomoto_jupyter) dynamics() (colomoto.minibn.BooleanNetwork method) (colomoto.minibn.UpdateModeDynamics method) E ElementaryUpdateModeDynamics (class in colomoto.minibn) extend() (colomoto.types.Hypercube method) (colomoto.types.HypercubeCollection method) F FAsyncRun (class in colomoto.minibn) FullyAsynchronousDynamics (class in colomoto.minibn) G GAsyncRun (class in colomoto.minibn) GeneralAsynchronousDynamics (class in colomoto.minibn) H Hypercube (class in colomoto.types) HypercubeCollection (class in colomoto.types) I id_from_url() (in module cellcollective) import_colomoto_tool() (in module colomoto_jupyter) import_data() (colomoto.minibn.BaseNetwork method) (colomoto.minibn.BooleanNetwork method) (colomoto.minibn.MultiValuedNetwork method) influence_graph() (colomoto.minibn.BooleanNetwork method) (colomoto.minibn.MultiValuedNetwork method) inputs() (colomoto.minibn.BooleanNetwork method) is_constant() (in module colomoto.minibn) is_instanciated() (colomoto.minibn.MVVar method) is_single_state (colomoto.types.Hypercube property) (colomoto.types.HypercubeCollection property) J jupyter_js() (in module colomoto_jupyter) jupyter_setup() (in module colomoto_jupyter) L level() (colomoto.minibn.MVVar method) load() (colomoto.minibn.BaseNetwork class method) (in module cellcollective) M make_hash() (colomoto.minibn.BooleanNetwork method) match_partial_state() (colomoto.types.Hypercube method) (colomoto.types.HypercubeCollection method) (colomoto.types.PartialState method) match_state() (colomoto.types.Hypercube method) (colomoto.types.HypercubeCollection method) (colomoto.types.PartialState method) module cellcollective colomoto.minibn colomoto.types colomoto_jupyter multivalue_merge() (in module colomoto.types) MultiValuedNetwork (class in colomoto.minibn) MVVar (class in colomoto.minibn) N nodevar() (colomoto.minibn.MVVar method) NOT (class in colomoto.minibn) P ParallelDynamics (in module colomoto.minibn) partial_dynamics() (colomoto.minibn.UpdateModeDynamics method) PartialState (class in colomoto.types) PeriodicDynamics (class in colomoto.minibn) project() (colomoto.types.Hypercube method) (colomoto.types.HypercubeCollection method) (colomoto.types.PartialState method) propagate_constants() (colomoto.minibn.BooleanNetwork method) push() (colomoto.minibn.UpdateModeDynamics method) R random_walk() (colomoto.minibn.UpdateModeDynamics method) rename() (colomoto.minibn.BaseNetwork method) rewrite() (colomoto.minibn.BaseNetwork method) (colomoto.minibn.MultiValuedNetwork method) S sanitize_names() (colomoto.minibn.BaseNetwork method) sbml_basename (cellcollective.CellCollectiveConnector property) sbml_urls (cellcollective.CellCollectiveConnector property) select_for_update() (colomoto.minibn.FAsyncRun method) (colomoto.minibn.GAsyncRun method) (colomoto.minibn.SyncRun method) SequentialDynamics (class in colomoto.minibn) show_image() (in module colomoto_jupyter) simplify() (colomoto.minibn.BooleanNetwork method) (colomoto.minibn.MultiValuedNetwork method) (colomoto.types.Hypercube method) (colomoto.types.HypercubeCollection method) (colomoto.types.State method) simplify_dnf() (in module colomoto.minibn) source() (colomoto.minibn.BaseNetwork method) (colomoto.minibn.BooleanNetwork method) (colomoto.minibn.MultiValuedNetwork method) species (cellcollective.CellCollectiveSBMLModel property) species_metadata() (cellcollective.CellCollectiveSBMLModel method) species_ncbi_gene() (cellcollective.CellCollectiveSBMLModel method) species_uniprotkb() (cellcollective.CellCollectiveSBMLModel method) State (class in colomoto.types) struct_of_dnf() (in module colomoto.minibn) SynchronousDynamics (class in colomoto.minibn) SyncRun (class in colomoto.minibn) T tabulate() (in module colomoto_jupyter) to_biolqm() (colomoto.minibn.BaseNetwork method) (in module cellcollective) to_pint() (colomoto.minibn.BooleanNetwork method) to_pyboolnet() (colomoto.minibn.BooleanNetwork method) TrapSpaceAttractor (class in colomoto.types) TrapSpacesAttractor (class in colomoto.types) U UpdateModeDynamics (class in colomoto.minibn) URL() (in module colomoto_jupyter) url_matches() (in module cellcollective) V v() (colomoto.minibn.BaseNetwork method) vars() (colomoto.minibn.BaseNetwork method) Z zero() (colomoto.minibn.BaseNetwork method)